Resolving the taxonomic status of Abrothrix andina
(Rodentia, Cricetidae): evidence from topotypic specimens

Mauro N. Tammone1 , Erika Cuellar Soto2 , Carola Cañón3 , Jonathan A. Guzmán4 , and Ulyses F.J. Pardiñas5* .

1Instituto de Investigaciones en Biodiversidad y Medioambiente, CONICET-UN Comahue, Bariloche, Argentina. E-mail: mtammone@comahue-conicet.gob.ar (MNT).

2Department of Biology, College of Science, Sultan Qaboos University, Muscat, Oman. E-mail: e.soto@squ.edu.om (ECS).

3Cape Horn International Center for Global Change Studies and Biocultural Conservation (CHIC), Puerto Williams; Pontificia Universidad Católica de Chile, Facultad de Ciencias Biológicas, Departamento de Ecología; and Instituto Milenio Centro de Regulación del Genoma (CRG), Santiago, Chile. E-mail: carolacanonv@gmail.com (CC).

4Laboratorio de Historia Natural (LAHN), Universidad de Concepción, Campus Los Ángeles, Chile. E-mail: jguzman@udec.cl (JAG).

5Instituto de Diversidad y Evolución Austral (IDEAus-CONICET), Puerto Madryn, Argentina; and Instituto Nacional de Biodiversidad (INABIO), Quito, Ecuador.

*Corresponding author: ulyses@cenpat-conicet.gob.ar

Recent studies have demonstrated that the Andean sigmodontine rodent Abrothrix andina (Sigmodontinae, Abrotrichini) is neither widespread nor a senior synonym of several nominal taxa (i.e., dolichonyx, cinnamomea, jucundus, gossei, and polius) described from Argentina, Chile, and Peru since the 19th century. However, a comprehensive taxonomic and nomenclatural reassessment requires the examination of type material. Here, we address this by analyzing topotypic specimens collected from three Andean localities near Santiago de Chile (Chile), the type locality of A. andina. Cytochrome b sequences from these specimens cluster within Abrothrix olivacea. These results support treating Abrothrix andina (Philippi in Philippi & Landbeck, 1858) as a junior synonym of Abrothrix olivacea (Waterhouse, 1837). Additionally, the nominal form Abrothrix gossei (Thomas, 1920) warrants recognition as a distinct species of Abrothrix, sister to A. olivacea. Although this study appears to complete the taxonomic reassessment of A. andina, a remote possibility remains that its holotype, currently lost, represents a still-unsampled Andean highland population, now extinct or extremely rare due to climate change.

Keywords: Abrothrix gossei; Abrothrix olivacea; Argentina; Chile; cytochrome b; topotype.

Estudios recientes han demostrado que el roedor sigmodontino andino Abrothrix andina (Sigmodontinae, Abrotrichini) no es ni una especie de amplia distribución, ni un sinónimo principal de varios taxones nominales (i.e., dolichonyx, cinnamomea, jucundus, gossei y polius) descritos desde el siglo XIX en Argentina, Chile y Perú. Sin embargo, una reevaluación taxonómica y nomenclatural integral requiere el examen del material tipo. Aquí abordamos esta cuestión mediante el análisis de especímenes topotípicos recolectados en tres localidades andinas cercanas a Santiago de Chile (Chile), la localidad tipo de A. andina. Las secuencias del citocromo b de estos especímenes se agrupan dentro de Abrothrix olivacea. Estos resultados respaldan tratar a Abrothrix andina (Philippi in Philippi & Landbeck, 1858) como sinónimo junior de Abrothrix olivacea (Waterhouse, 1837). Además, la forma nominal Abrothrix gossei (Thomas, 1920) merece ser reconocida como una especie distinta de Abrothrix, hermana de A. olivacea. Aunque este estudio parece completar la reevaluación taxonómica de A. andina, persiste la posibilidad remota de que su holotipo, actualmente perdido, represente una población altoandina aún no muestreada, hoy extinta o extremadamente rara debido al cambio climático.

Palabras clave: Abrothrix gossei; Abrothrix olivacea; Argentina; Chile; citocromo b; topotipo.

© 2026 Asociación Mexicana de Mastozoología, www.mastozoologiamexicana.org

Since the late 20th century, sigmodontine rodents have received renewed taxonomic attention, leading not only to the description of new taxa but also to the revision of well-established species. In many cases, such revisions have resulted in the resurrection of nominal forms previously regarded as synonyms, thereby expanding the recognized diversity of the group (e.g., Myers et al. 1990; Jayat et al. 2016; Rocha et al. 2018) and demonstrating that some supposedly widespread species are, in fact, composite taxa. Less frequently, recent taxonomic reassessments have shown that supposedly widespread species, long maintained under taxonomic stasis, are actually composites of erroneously synonymized nominal forms.

The Andean cricetid Abrothrix andina (Philippi in Philippi & Landbeck 1858) has recently emerged as a paradigmatic example of the latter case. Historically, this member of the subgenus Angelomys was considered a widespread species ranging from central-western Argentina and Chile to southern Peru (e.g., Patterson et al. 2015; Pardiñas 2017; Teta et al. 2017; Tammone et al. 2025a; 2025b). This taxon was notable not only for its broad latitudinal distribution, spanning approximately 10 degrees, but also for its historically inclusive concept, which subsumed five nominal forms described between the late 19th and early 20th centuries. These are, in chronological order: Hesperomys dolichonyx Philippi, 1896, Hesperomys dolichonyx cinnamomea Philippi, 1896, Akodon jucundus Thomas, 1913, Akodon gossei Thomas, 1920, and Akodon andinus polius Osgood, 1944 (Philippi 1896; Thomas 1913; 1920; Osgood 1943; 1944). Within this general taxonomic framework, A. andina has also been studied in other contexts, such as physiology, ecology, and natural history (e.g., Bozinovic 1993; Bozinovic et al. 1988; 1990; 1999; Rosenmann and Ruiz 1993; López-Cortés et al. 2007).

From a taxonomic perspective, Mann (1978) suggested that A. andina might be conspecific with Abrothrix olivacea (Waterhouse 1837). However, it was not until recently that two studies employing cytochrome b sequences provided key insights into the taxonomy of A. andina and A. olivacea. Tammone et al. (2025a) showed that topotypes of A. gossei from Mendoza (Argentina) form the sister group to A. olivacea, whereas individuals assigned to A. polius from southern Peru were nested within A. olivacea. Subsequently, Tammone et al. (2025b) confirmed that A. jucundus and A. dolichonyx, two other nominal taxa included under A. andina, also clustered within A. olivacea. However, a crucial piece of this taxonomic puzzle is to determine the status of the populations of A. andina inhabiting the Andes near Santiago de Chile, as this region corresponds to the type locality of the species (Philippi and Landbeck 1858; Philippi 1900).

Here, we focus on the status of these high-Andean populations of A. andina from localities near Santiago de Chile in order to assess Mann’s (1978) hypothesis. Sequencing of topotypic specimens provides further evidence supporting the synonymy of A. andina with A. olivacea. The main taxonomic and nomenclatural implications of these findings are discussed.

Materials and methods

Sampled localities correspond to Andean ranges in central and northern Chile, in the Region Metropolitana and Tarapacá, respectively (Table ١; Figure 1 and Figure 2). Specimens were secured following the guidelines established by the American Society of Mammalogists (Sikes et al. 2016). Collections were authorized by the Servicio Agrícola y Ganadero de Chile (SAG) RESOLUCIÓN EXENTA Nº: 6230/2024 to JG. Primary taxonomic identification was based on geographic distribution and external morphology. Vouchers were deposited in the Laboratorio de Estudios de Mamíferos, Universidad Nacional de Concepción (LEM-UCLA, Los Ángeles, Chile). Currently, they are cataloged under the field number JG (= collector number of Jonathan Guzman), which will be updated to LEM once the numbering process is completed.

Genomic DNA was extracted using the DNeasy Blood and Tissue kit (Qiagen, Valencia, California), following the manufacturer’s instructions. PCR amplification of the entire cytochrome b (cyt b) locus (1,140bp) was achieved using two pairs of primers: MVZ05-16, MVZ23-14. Master-mix, and thermocycling conditions were the same as detailed previously (Smith and Patton 1999; Tammone et al. 2016). Sequencing was performed at Macrogen Inc (Seoul, South Korea). The obtained sequences (GenBank accession numbers PX116190-PX116201) were used to perform a phylogenetic analysis in combination with 53 sequences retrieved from GenBank, representing all known populations of Abrothrix from central and northern Andean ranges from Chile and Argentina. The complete dataset includes our newly sampled topotypes of A. andina, plus samples from all nominal forms recognized within A. olivacea (Quiroga-Carmona et al. 2022; Tammone et al. 2025a), A. gossei (Tammone et al. 2025a), as well as other five species of Abrothrix (i.e., hirta, illutea, lanosa, longipilis, and sanborni; Supplementary Data SD1). Sequences of Geoxus valdivianus and Paynomys macronyx were used as outgroup.

Phylogenetic trees were generated by maximum likelihood algorithms (ML; RAxML v.8, Stamatakis 2014) and Bayesian inference (BI; MrBayes 3.2.7a; Ronquist et al. 2012), using the CIPRES Getaway portal (Miller et al. 2010). ML analysis was run 1,000 times using the rapid Bootstrap protocol, followed by identification of the tree with the best ML score. BI analysis was run for 2 million generations with sampling every 1,000 generations using one cold and three hot chains. Twenty-five percent of sampled trees were removed as a conservative measure of burn-in, which was assessed using Tracer 1.7 (Rambaut et al. 2018). This analysis was repeated four times using different numbers of initial seeds, after which the convergence of the resulting trees was assessed. We use the GTR+F+I+G4 substitution model as estimated by Corrected Akaike Information Criterion using ModelFinder (Kalyaanamoorthy et al. 2017). Strongly supported clades are considered those with posterior probabilities (PP) ≥ 0.95 for BI and bootstrap values (MLB) ≥ 75% for ML. Following identification of well-supported nodes, percent sequence divergence (p-distance; Nei and Kumar 2000) was calculated among and within clades using a pairwise deletion mode for missing data in MEGA 11 (Tamura et al. 2021).

Taxonomic inference in this study follows an integrative, lineage-based approach, in which species are interpreted as independently evolving evolutionary lineages identi-fiable through multiple lines of evidence (de Queiroz 2007; Fujita et al. 2012). Given the scope of the present work, focused on resolving the identity of a nominal taxon based on topotypic material, we do not implement algorithmic species delimitation methods. Instead, taxonomic decisions are based on the concordance of: (i) phylogenetic placement of topotypic or near-topotypic populations; (ii) relative levels of genetic divergence in comparison with recognized species and clades within Abrothrix, and (iii) consistency with available phenotypic and historical taxonomic evidence. Under this framework, the absence of genealogical exclusivity, combined with low genetic divergence and lack of consistent phenotypic differentiation, is interpreted as evidence against species-level distinction.

Results

Topotypes of Abrothrix andina from Andean localities near Santiago de Chile (Farellones and Cajón del Maipo; Table 1, Figure 1) are phylogenetically nested within Abrothrix olivacea, forming a well-supported clade (PP = 0.98; MLB = 89%; Figure 3). This clade also includes typical A. olivacea from Valparaíso and populations extending from La Serena to Parinacota in northern Chile (Figure 3: “central-north” A. olivacea clade). This “central-north” clade is sister to a group comprising A. olivacea from central to southern Patagonia in Argentina and Chile (PP = 0.98; MLB = 77%; Figure 3: “central-south” clade).

A third well-supported clade of A. olivacea (PP = 0.98; MLB = 77%) includes two distinct groups: one from Mendoza Province, Argentina (Las Leñas, Las Loicas, and La Valenciana; Figure 3: “Mendoza” clade), and another from Tierra del Fuego (Argentina and Chile; Figure 3: “south” clade). Two additional A. olivacea clades were identified in the Altiplano. One (PP = 1; MLB = 99%) comprises the new sequence from Tarapacá (Quebrada de Choja) together with samples from southern Peru, Bolivia, and Argentina (Figure 3: “dolichonyx-polius” clade). The other (PP = 1; MLB = 100%) consists exclusively of samples from Salta and Jujuy, Argentina (Figure 3: “jucundus” clade).

Percent sequence divergence within the clade including topotypes of A. andina (Farellones and Cajón del Maipo) and typical A. olivacea (Valparaíso) was 1.5% (Figure 4). Comparable values were observed within other A. olivacea clades and among other species of Abrothrix (e.g., A. hirta = 1.4%; Figure 4). Divergence between clades of A. olivacea ranged from 4.4% to 6.5%, whereas divergence among recognized species of Abrothrix varied from 10% to 13% (Figure 4). These patterns support the conspecificity of topotypic A. andina with A. olivacea.

Phenotypically, topotypes of A. andina from the high Andes near Santiago de Chile are indistinguishable from A. olivacea (e.g., Osgood 1943; Mann 1978; Pine et al. 1979; Rodríguez-Serrano et al. 2006, 2008; Figure 2). These rodents are small (total length = 167 mm; tail = 67 mm; hind foot with claw = 23 mm; ear = 16 mm; weight = 33 g; Supplementary Data SD2), with grayish-brown dorsal pelage tinged with olive, grayish ventral fur, moderate countershading, and an inconspicuous lateral line.

The eyes are small, surrounded posteriorly by a subtle ring of lighter, very short hairs, producing a soft contrast with the dark eye. The ears are rounded and moderately haired, lacking distinct pre-auricular whitish patches but occasionally showing subtle lighter hairs. The tail is sharply bicolored. The manus and pes are sparsely haired, with acute claws slightly longer than those of typical A. olivacea (cf. Osgood 1943). Overall, both molecular and morphological evidence indicate that the type-locality populations of A. andina are fully nested within A. olivacea.

Discussion

Abrothrix andina was originally described as Mus andinus from a single specimen (Philippi and Landbeck 1858). It was characterized as a small rodent with dark-gray dorsal fur, similar to Mus musculus, and a bluish-white ventral surface. Ears were well-haired but short, barely reaching the distance between the eye and the ear; the tail was approximately half the head-body length, blackish above and white below, densely haired; and the feet were covered with white fur, with elongated, compressed claws on both manus and pes. Original measurements reported were: head and body length ~100 mm; tail length ~50 mm; ear length ~10 mm; hind foot with claws ~20 mm; and claws ~4 mm (Philippi and Landbeck 1858). The description emphasized the soft and lax nature of the fur, the much longer claws compared to M. musculus, and the overall resemblance to Abrothrix longipilis (cited as Mus longipilis) and A. olivacea (cited as Mus rengeri [sic]). This account was later translated into Spanish and supplemented with a color illustration of the living animal (Philippi 1900).

Thomas (1920), describing Akodon gossei from the Andes of Mendoza Province, emphasized differences from M. andinus, including larger size, gray (not rufous) dorsal coloration, elongated claws, and the absence of light ear patches. He concluded that M. andinus was “evidently quite a different animal” (Thomas 1920). However, Osgood (1943) was the first to examine the original material directly and synonymized A. gossei under A. andina, rejecting color and metric differences proposed by Thomas (1920). Osgood (1943) also redescribed dolichonyx, from northern Chile, and later A. andinus polius from Salinas, Arequipa, Peru (Osgood 1944). These studies laid the foundation for the concept of Abrothrix andina as a widespread, polytypic high-Andean sigmodontine, a view maintained by subsequent authors (e.g., Mann 1978; Patterson et al. 2015; Pardiñas 2017; Teta et al. 2017).

Despite its historical and nomenclatural significance, typical A. andina remained largely unexamined. The holotype has not been subject to modern taxonomic reassessment since its redescription by Osgood (1943). This omission is notable given that the type locality, “Andibus elevatis prov. Santiago” (Philippi and Landbeck 1858) falls within a region of intense research on Abrothrix and other sigmodontines. Consequently, A. andina has been overlooked or misinterpreted in several studies, including Pine et al. (1979), Reise and Venegas (1987), Gallardo et al. (1988), Barrantes et al. (1993), Smith and Patton (1999), and more recent systematic studies (Cañón et al. 2014; D’Elía et al. 2015).

The topotypes sampled in this study from Farellones and Cajón del Maipo (Andes near Santiago de Chile) correspond morphologically and metrically to both the original holotype description (Philippi and Landbeck 1858) and Osgood (1943) redescription. These specimens are small Abrothrix (total length ≈ 167 mm; tail ≈ 67 mm; hind foot with claw ≈ 23 mm; ear ≈ 16 mm). Dorsally, the pelage is gray to gray-olivaceous, ventrally washed whitish, and countershading is moderate. Ears are rounded, well-haired, and lack post-auricular whitish patches. The tail is sharply bicolored, and manus and pes are sparsely haired with slightly elongated claws. These traits clearly distinguish them from A. gossei, which has conspicuous white ear patches (Thomas 1920; Contreras and Rosi 1981; Tammone et al. 2025a; Figure 5).

The conducted phylogenetic analyses recover topotypes of A. andina within a well-supported clade that also includes typical A. olivacea from Valparaíso and populations extending from La Serena to Parinacota in northern Chile. Percent sequence divergence within the topotype-inclusive clade is 1.5%, similar to within-species divergence in other Abrothrix (e.g., Cañón et al. 2014; D’Elía et al. 2015; Quiroga-Carmona et al. 2022).

Taken together, molecular and morphological data indicate that the studied topotypes belong to the same taxon as the M. andinus holotype, supporting synonymy with A. olivacea. Recognizing A. andina as junior synonym of A. olivacea reveals the remarkable complexity of this species. A. olivacea spans ~40° latitude from southern Peru to Tierra del Fuego, making it one of the most geographically widespread sigmodontines (Patterson et al. 2015; Cañón et al. 2024; Cairampoma et al. 2024; Tammone et al. 2025a; 2025b). Historically, over 30 nominal taxa, have been subsumed under A. olivacea (Philippi and Landbeck 1858; Thomas 1913; 1920; Osgood 1944; Rodríguez-Serrano et al. 2006; Teta et al. 2017; Tammone et al. 2025a; 2025b). This extensive synonymy is unparalleled among widespread abrotrichines, such as A. jelskii or A. hirta (e.g., Patterson et al. 2015).

An alternative to considering Abrothrix olivacea as a polytypic species is to recognize it as a complex of cryptic or still poorly known species. Similar cases have been documented in sigmodontine rodents, where species once thought to be widespread and singular were later found to comprise multiple distinct units. In such instances, molecular markers have played a central role in shaping new taxonomic hypotheses. For example, following Hershkovitz’s (1962) influential revision of Calomys, several large-bodied populations previously assigned to different nominal forms within this phyllotine genus were grouped under a single species, Calomys callosus. Today, C. callosus is understood as a species complex comprising at least seven distinct taxa (e.g., González-Ittig et al. 2022). The history of sigmodontine taxonomy reflects shifts between expansive and restrictive classifications. Over the past two centuries, taxonomic schools have alternatively expanded species concepts—subsuming nominal forms as synonyms—or refined them, reinstating previously synonymized taxa as valid species. This pattern is exemplified by taxa such as Akodon boliviensis and Oligoryzomys flavescens (see Myers et al. 1990; González-Ittig et al. 2010). Recent studies, including the present contribution, suggest that A. olivacea exhibits a geographically structured genealogy composed of monophyletic clades, with inter-clade genetic divergences ranging from 1% to 7% (e.g., Lessa et al. 2010; Giorello et al. 2021; Quiroga-Carmona et al. 2022; 2023; Tammone et al. 2025b: Figure 4). Additionally, phenotypic differences among populations are evident, as past researchers have distinguished A. andina from A. olivacea in northern Chile (e.g., Palma et al. 2005), or A. xanthorhina from A. olivacea in Argentine Patagonia (e.g., Lozada et al. 1996; Smith et al. 2001). However, despite being a moderately well-studied sigmodontine, A. olivacea inhabits an extensive and environmentally heterogeneous range, leaving substantial gaps in its known distribution. Some monophyletic groups identified in the current cyt b phylogeny may simply reflect inadequate sampling rather than true evolutionary lineages. For instance, north of Santiago, a ~1,000 km region remains unsampled (Figure 1). At the other end of the species’ range, haplotypes from the southernmost Chilean populations have only recently been reported (Cañón et al. 2024) and await integrative analysis. In summary, whether A. olivacea will ultimately be divided into multiple species remains uncertain. If taxonomic partitioning occurs, numerous available names could be used to designate new binomial or trinomial combinations (e.g., Smith et al. 2001; Rodríguez-Serrano et al. 2006).

Politically, recognizing A. andina as a junior synonym of A. olivacea reduces by one the number of species recorded in Chile, lowering the count from eight to seven (D’Elía et al. 2020). Despite this reduction, Abrothrix remains the most diverse sigmodontine genus in Chile, nearly doubling the species richness of its closest competitor, the phyllotine Eligmodontia (D’Elía et al. 2020). However, this issue is not settled, as an additional Abrothrix species, A. gossei, is likely present in west-central Chile. Its known distribution extends to Las Cuevas and Cristo Redentor, being both localities in Mendoza Province, very near the Chilean border (Da Rosa et al. 2020; Tammone et al. 2025a). The continuous Andean habitat along the Mendoza River strongly suggests its occurrence in Chile. Notably, Thomas (1920) reported A. gossei in “Chili,” based on a specimen labeled as Mus andinus, received from R. Philippi.

Abrothrix gossei, previously considered a synonym of A. andina, is now confirmed as a valid species and the sister taxon to A. olivacea. Its distribution extends from northern Mendoza to Tucumán, with specimens characterized by small size (total length ~140 mm; weight ~18 g), dense pelage, small rounded ears with prominent post-auricular white patches, large claws, and short bicolored tails (Thomas 1920; Osgood 1943; Contreras and Rosi 1981; Ferro and Barquez 2008; Tammone et al. 2025a; 2025b). According to Thomas (1920), the species is also entering in Chile. The karyotype of A. gossei has been described from Mendoza and San Juan populations (Da Rosa et al. 2020).

A remote possibility remains that the holotype of M. andinus represents a taxon distinct from here studied topotypes. Collected in 1857 during the Little Ice Age (Villalba 1994), environmental conditions may have supported populations now extirpated. Glacial retreat in the Andes has accelerated over the past century (Masiokas et al. 2008; Lopez et al. 2010), and altitudinal shifts in small mammal assemblages have been documented (Mann 1944; Mella 2006), including also regional extinctions (Cuellar Soto et al. 2026). Whether A. andina sensu stricto (i.e., restricted to its holotype) persists or has been replaced by A. olivacea remains unknown. The loss of the holotype (J. Canto, pers. comm.) prevents direct testing, but museomic approaches could clarify this historical uncertainty.

Conclusions

Based on the evidence presented herein, we consider Mus andinus, currently referred to as Abrothrix andina, to be a junior synonym of Abrothrix olivacea.

This conclusion is supported by: (1) Topotypic specimens of A. andina are nested within A. olivacea and do not form a distinct lineage; (2) Low divergence (~1.5%) between topotypic A. andina and A. olivacea falls within intraspecific variation and is far below interspecific levels; (3) No consistent phenotypic differences distinguish topotypic A. andina from A. olivacea; and (4) Sampled populations correspond to the type region and agree with historical descriptions.

Acknowledgments

During the process of reassessing Abrothrix andina, we benefited from the generous collaboration of many individuals who facilitated fieldwork and museum studies. We are especially grateful to Raúl Briones for supporting the logistics of field campaigns in the Metropolitan Region. We also thank colleagues who contributed through discussions and feedback, including Pablo Valladares, José Urquizo, Agustina Murgia, Damián Voglino, and Ignacio Ferro. Two anonymous reviewers provided constructive comments that significantly improved the clarity of this work. Finally, we acknowledge ChatGPT for assistance in refining the linguistic accuracy and grammatical style of the manuscript. This study was financially supported by Agencia Nacional de Promoción de la Investigación, el Desarrollo Tecnológico y la Innovación grant #2020-2068 (to UFJP).

Declaration of Artificial Intelligence use

Artificial intelligence was used exclusively to assist with language editing and stylistic refinement of the manuscript. Specifically, the authors used ChatGPT (OpenAI; model version GPT-5.2) to improve clarity, grammar, coherence, and consistency of academic English. ChatGPT is accessible via: https://openai.com/chatgpt. AI tools were not used for data generation, data analysis, figure preparation, image manipulation, statistical analyses, or interpretation of results. All scientific content, analyses, conclusions, and final editorial decisions are entirely the responsibility of the authors.

Author contributions

The authors accepted responsibility for the entire content of this manuscript and approved its submission. Mauro N. Tammone: laboratory analysis, investigation, writing–original draft. Erika Cuellar Soto: investigation. Carola Cañón: laboratory analysis. Jonathan Alexi Guzman Sandoval: data collection. Ulyses F.J. Pardiñas: conceptualization, investigation, supervision, writing–original draft. All the authors: Writing–review and editing.

Supplementary data

SD1. List of sequences downloaded from GenBank that were used to construct the phylogeny.

SD2. External measurements of the specimens sequenced as part of this study. Collector: Jonathan A. Guzman Sandoval.

Data availability

The studied material is available in public collections. Genetic data can be accessed in the public database GenBank (accession numbers PX116190-PX116201). Additional raw data can be found in the supplementary material files or obtained upon request from the corresponding author.

Literature cited

Barrantes GE, Ortells MO, and Reig OA. 1993. New studies on allozyme genetic distance and variability in akodontine rodents (Cricetidae) and their systematic implications. Biological Journal of the Linnean Society 48:283–298. https://doi.org/10.1111/j.1095-8312.1993.tb02092.x

Bozinovic F. 1993. Nutritional ecophysiology of the Andean mouse Abrothrix andinus: energy requirements, food quality and turnover time. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 104:601–604. https://doi.org/10.1016/0300-9629(93)90471-F

Bozinovic F, Lagos JA, and Marquet PA. 1999. Geographic energetics of the Andean mouse, Abrothrix andinus. Journal of Mammalogy 80:205–209. https://doi.org/10.2307/1383220

Bozinovic F, Novoa FF, and Veloso C. 1990. Seasonal changes in energy expenditure and digestive tract of Abrothrix andinus (Cricetidae) in the Andes range. Physiological Zoology 63:1216–1231. https://doi.org/10.1086/physzool.63.6.30152641

Bozinovic F, Veloso C, and Rosenmann M. 1988. Cambios del tracto digestivo de Abrothrix andinus (Cricetidae): efecto de la calidad de dieta y requerimientos de energía. Revista Chilena de Historia Natural 61:245–251.

Cañón C, Barroso O, D’Elía G, Vásquez R, and Rozzi R. 2024. Native rodents of the Cape Horn Biosphere Reserve at the southern end of Chile: advances in their knowledge and conservation. Anales del Instituto de la Patagonia 52:1–21. https://doi.org/10.22352/AIP202452007

Cañón C, Mir D, Pardiñas UFJ, Lessa E, and D’Elía G. 2014. A multilocus perspective on the phylogenetic relationships and diversification of rodents of the tribe Abrotrichini (Cricetidae: Sigmodontinae). Zoologica Scripta 43:443–454. https://doi.org/10.1111/zsc.12069

Contreras JR, and Rosi MI. 1981. Notas sobre los Akodontini argentinos (Rodentia, Cricetidae). II. Akodon andinus andinus (Philippi, 1868) en la Provincia de Mendoza. Historia Natural 32:233–236.

Cuellar Soto E, Tammone MN, Voglino D, and Pardiñas UFJ. 2026. The plausible extinction of an Andean rodent: a victim of climate change? Mammalia 90:120–125. https://doi.org/10.1515/mammalia-2025-0040

D’Elía G, Teta P, Upham NS, Pardiñas UFJ, and Patterson BD. 2015. Description of a new soft-haired mouse, genus Abrothrix (Sigmodontinae), from the temperate Valdivian rainforest. Journal of Mammalogy 96:839–853. https://doi.org/10.1093/jmammal/gyv103

D’Elía G, Canto J, Ossa G, Verde-Arregoitia LD, Bostelmann E, Iriarte A, et al. 2020. Lista actualizada de los mamíferos vivientes de Chile. Boletín del Museo Nacional de Historia Natural 69:67–98. https://doi.org/10.54830/bmnhn.v69.n2.2020.6

Da Rosa FA, Ojeda A, Novillo A, Labaroni C, Buschiazzo M, Teta P, et al. 2020. Chromosome variability and evolution in rodents of the tribe Abrotrichini (Rodentia, Cricetidae, Sigmodontinae). Mammalian Research 65:59–67. https://doi.org/10.1007/s13364-019-00463-0

De Queiroz K. 2007. Species concepts and species delimitation. Systematic Biology 56:879–886. https://doi.org/10.1080/10635150701701083

Ferro LI, and Barquez RM. 2008. Comentarios sobre la distribución de Abrothrix andinus y Calomys lepidus (Rodentia: Cricetidae) en la provincia de Tucumán, Argentina. Mastozoología Neotropical 15:197–201.

Fujita MK, Leaché AD, Burbrink FT, McGuire JA, and Moritz C. 2012. Coalescent-based species delimitation in an integrative taxonomy. Trends in Ecology & Evolution 27:480–488. https://doi.org/10.1016/j.tree.2012.04.012.

Gallardo MH, Aguilar G, and Goicoechea O. 1988. Systematics of sympatric cricetid Akodon (Abrothrix) rodents and their taxonomic implications. Medio Ambiente, Ambientes Terrestres 9:65–74.

Giorello FM, D’Elía G, and Lessa EP. 2021. Genomic footprints of Quaternary colonization and population expansion in the Patagonian–Fuegian region rules out a separate southern refugium in Tierra del Fuego. Journal of Biogeography 48:2656–2670. https://doi.org/10.1111/jbi.14231

González-Ittig RE, Pinotti JD, Carballo J, Martín ML, Levis S, Calderón G, et al. 2022. Molecular systematics and biogeographic insights of the Calomys callosus complex (Rodentia, Cricetidae). Zoologica Scripta 51:498–521. https://doi.org/10.1111/zsc.12556

González-Ittig RE, Salazar-Bravo J, Barquez RM, and Gardenal CN. 2010. Phylogenetic relationships among species of the genus Oligoryzomys (Rodentia, Cricetidae) from Central and South America. Zoologica Scripta 39:511–526. https://doi.org/10.1111/j.1463-6409.2010.00446.x

Hershkovitz P. 1962. Evolution of Neotropical cricetine rodents (Muridae) with special reference to the Phyllotine group. Fieldiana Zoology 46:1–524.

Jayat JP, Ortiz PE, and D’Elía G. 2016. Taxonomy of the Phyllotis osilae species group in Argentina; the status of the “Rata de los nogales” (Phyllotis nogalaris Thomas, 1921; Rodentia: Cricetidae). Zootaxa 4083:397–417. https://doi.org/10.11646/zootaxa.4083.3.5

Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, and Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14:587–589. https://doi.org/10.1038/nmeth.4285

Lessa EP, D’Elía G, and Pardiñas UFJ. 2010. Genetic footprints of late Quaternary climate change in the diversity of Patagonian–Fueguian rodents. Molecular Ecology 19:3031–3037. https://doi.org/10.1111/j.1365-294X.2010.04734.x

Lopez P, Chevallier P, Favier V, Pouyaud B, Ordenes F, and Oerlemans J. 2010. A regional view of fluctuations in glacier length in southern South America. Global and Planetary Change 71:85–108. https://doi.org/10.1016/j.gloplacha.2009.12.009

López-Cortés F, Cortés A, Miranda E, and Rau JR. 2007. Dietas de Abrothrix andinus, Phyllotis xanthopygus (Rodentia) y Lepus europaeus (Lagomorpha) en un ambiente altoandino de Chile. Revista Chilena de Historia Natural 80:3–12.

Lozada M, Monjeau A, Heinemann KM, Guthmann N, and Birney EC. 1996. Abrothrix xanthorhinus. Mammalian Species 540:1–6. https://doi.org/10.2307/3504275

Mann FG. 1944. Dos nuevas especies de roedores. Biológica (Santiago) 1:95–113.

Mann FG. 1978. Los pequeños mamíferos de Chile. Marsupiales, quirópteros, edentados y roedores. Gayana Zoología 40:1–342.

Masiokas MH, Villalba R, Luckman BH, Lascano ME, Delgado S, and Stepanek P. 2008. 20th-century glacier recession and regional hydroclimatic changes in northwestern Patagonia. Global and Planetary Change 60:85–100. https://doi.org/10.1016/j.gloplacha.2006.07.031

Mella JE. 2006. Micromamíferos en el Monumento Natural El Morado: abundancia relativa y cambios estacionales. Noticiario Mensual, Museo Nacional de Historia Natural, Santiago de Chile 357:10–18.

Miller MA, Pfeiffer W, and Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE) 2010: 1–8. https://doi.org/10.1109/GCE.2010.5676129

Myers P, Patton JP, and Smith MF. 1990. A review of the boliviensis group of Akodon (Rodentia: Sigmodontinae), with emphasis on Peru and Bolivia. Miscellaneous Publications, Museum of Zoology, University of Michigan 177:iv + 1–104.

Nei M, and Kumar S. 2000. Molecular Evolution and Phylogenetics. New York (EEUU): Oxford University Press

Osgood WH. 1943. The mammals of Chile. Field Museum of Natural History, Zoology Series 30:1–268.

Osgood WH. 1944. Nine new South American rodents. Field Museum of Natural History, Zoology Series 29:191–204.

Cairampoma R, D’Elía G, Pacheco Torres VR, Sánchez-Vendizú P, and Diaz S. 2024. Primer registro de Abrothrix olivacea (Waterhouse, 1837) en Perú basado en material histórico de Tacna. Revista Peruana de Biología 31:e28882. https://doi.org/10.15381/rpb.v31i3.28882

Palma RE, Marquet PA, and Boric-Bargetto D. 2005. Inter- and intraspecific phylogeography of small mammals in the Atacama Desert and adjacent areas of northern Chile. Journal of Biogeography 32:1931–1941. https://doi.org/10.1111/j.1365-2699.2005.01349.x

Pardiñas UFJ. 2017. Genus Abrothrix Waterhouse, 1837. In: Wilson DE, Lacher TE Jr, and Mittermeier RA (eds.). Handbook of the Mammals of the World: Lagomorphs and Rodents I, Volume 6. Barcelona (SPA): Lynx Editions; p. 230–233.

Patterson BD, Smith MF, Teta P, and D’Elía G. 2015. Genus Abrothrix Waterhouse, 1837. In: Patton JL, Pardiñas UFJ, and D’Elía G, editors. Mammals of South America, Volume 2. Rodents. Chiago (EEUU): University of Chicago Press; p. 109–127.

Philippi RA. 1896. Descripcion [sic] de los mamíferos traídos del viaje de esploracion [sic] de Tarapacá, hecho por orden del gobierno en el verano de 1884 a 1885, por Federico Philippi. Anales del Museo Nacional de Santiago de Chile, Zoología 133:1–7.

Philippi RA. 1900. Figuras i descripciones de los murideos de Chile. Anales del Museo Nacional de Santiago de Chile, Zoología 14:1–70.

Philippi RA, and Landbeck L. 1858. Beschreibung einiger neuen Chilenischen Mäuse. Archiv für Naturgeschichte 24:77–82.

Pine RH, Miller SD, and Schamberger ML. 1979. Contributions to the mammalogy of Chile. Mammalia 43:339–376. https://doi.org/10.1515/mamm.1979.43.3.339

Quiroga-Carmona M, Abud C, Lessa EP, and D’Elía G. 2022. The mitochondrial genetic diversity of the Olive Field Mouse Abrothrix olivacea (Cricetidae; Abrotrichini) is latitudinally structured across its geographic distribution. Journal of Mammalian Evolution 29:413–430. https://doi.org/10.1007/s10914-021-09582-5

Quiroga-Carmona M, Teta P, and D’Elía G. 2023. The skull variation of the olive field mouse Abrothrix olivacea (Cricetidae: Abrotrichini) is localized and correlated to the ecogeographic features of its geographic distribution. PeerJ 11:e15200. https://doi.org/10.7717/peerj.15200

Rambaut A, Drummond AJ, Xie D, Baele G, and Suchard MA. 2018. Posterior summarization in Bayesian Phylogenetics Using Tracer 1.7. Systematic Biology 67:901–904. https://doi.org/10.1093/sysbio/syy032

Reise D, and Venegas W. 1987. Catalogue of records, localities and biotopes from research work on small mammals in Chile and Argentina. Gayana Zoología 51:103–130.

Rocha RG, Duda R, Flores T, Rossi R, Sampaio I, Mendes-Oliveira AC, et al. 2018. Cryptic diversity in the Oecomys roberti complex: revalidation of Oecomys tapajinus (Rodentia, Cricetidae). Journal of Mammalogy 99:174–186. https://doi.org/10.1093/jmammal/gyx149

Rodríguez-Serrano E, Cancino RA, and Palma RE. 2006. Molecular phylogeography of Abrothrix olivaceus (Rodentia: Sigmodontinae) in Chile. Journal of Mammalogy 87:971–980. https://doi.org/10.1644/05-MAMM-A-393R2.1

Rodríguez-Serrano E, Hernández CE, and Palma RE. 2008. A new record and an evaluation of the phylogenetic relationships of Abrothrix olivaceus markhami (Rodentia: Sigmodontinae). Mammalian Biology 73:307–317. https://doi.org/10.1016/j.mambio.2007.10.003

Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, et al. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61:539–542. https://doi.org/10.1093/sysbio/sys029

Rosenmann M, and Ruiz G. 1993. Seasonal changes of blood values in the Andean mouse Abrothrix andinus. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 105:119–122. https://doi.org/10.1016/0300-9629(93)90182-4

Sikes RS, and The Animal Care and Use Committee of the American Society of Mammalogists. 2016. Guidelines of the American Society of Mammalogists for the use of wild mammals in research. Journal of Mammalogy 92:235–253. https://doi.org/10.1093/jmammal/gyw078

Smith MF, and Patton JL. 1999. Phylogenetic relationships and the radiation of sigmodontine rodents in South America: evidence from cytochrome b. Journal of Mammalian Evolution 6:89–128. https://doi.org/10.1023/A:1020668004578

Smith MF, Kelt DA, and Patton JL. 2001. Testing models of diversification in mice in the Abrothrix olivaceus/xanthorhinus complex in Chile and Argentina. Molecular Ecology 10:397–405. https://doi.org/10.1046/j.1365-294X.2001.01183.x

Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312–1313. https://doi.org/10.1093/bioinformatics/btu033

Tammone MN, Lavin BR, Pardiñas UFJ, and Lacey EA. 2016. Post-extinction discovery of a population of the highly endemic colonial tuco-tuco (Ctenomys sociabilis). Journal of Mammalogy 97:1753–1761. https://doi.org/10.1093/jmammal/gyw146

Tammone MN, Cuellar Soto E, Voglino D, and Pardiñas UFJ. 2025a. New genetic data unveil taxonomic complexity in the high-Andean sigmodontine Abrothrix andina (Rodentia, Cricetidae). Mammal Research 70:159–165. https://doi.org/10.1007/s13364-024-00772-z

Tammone M, Cuellar Soto E, Voglino D, Urquizo JH, Ferro I, et al. 2025b. Deconstructing the high-Andean sigmodontine Abrothrix andina (Rodentia, Cricetidae): taxonomic insights from northwestern Argentinean and western Bolivian populations. Mammalia Aequatorialis 7:29–42. https://doi.org/10.59763/mam.aeq.v7i2.119

Tamura K, Stecher G, and Kumar S. 2021. MEGA11: Molecular Evolutionary Genetics Analysis Version 11. Molecular Biology and Evolution 38:3022–3027. https://doi.org/10.1093/molbev/msab120

Teta P, Cañón C, Patterson BD, and Pardiñas UFJ. 2017. Phylogeny of the tribe Abrotrichini (Cricetidae, Sigmodontinae): integrating morphological and molecular evidence into a new classification. Cladistics 33:153–182. https://doi.org/10.1111/cla.12164

Thomas O. 1913. On small mammals collected in Jujuy by Señor E. Budin. Annals and Magazine of Natural History 11:136–143.

Thomas O. 1920. On small mammals from the Famatina Chain, North-western Rioja. Annals and Magazine of Natural History 5:417–422.

Villalba R. 1994. Tree-ring and glacial evidence for the medieval warm epoch and the Little Ice Age in southern South America. Climatic Change 26:183–197. https://doi.org/10.1007/BF01092413

Waterhouse GR. 1837. Characters of new species of the genus Mus, from the collection of Mr. Darwin. Proceedings of the Zoological Society of London 1837 (part V):15– 21, 27–32.

Associated editors: Giovani Hernández Canchola and Pablo Colunga Salas

Submitted: October 29, 2025; Reviewed: January 28, 2026

Accepted: April 22, 2026; Published online: May 29, 2026

THERYA, 2026, Vol. 17(2):225-234

DOI: 10.12933/therya.2026.6243 ISSN 2007-3364

Table 1. Basic data of the specimens of Abrothrix andina analyzed in this paper. References: JG = collector number of Jonathan Guzman. Numbers (#) correspond to those in Figure 1.

#

Field no.

Locality

Region

Lat

Long

Alt (m)

4

JG 001

Quebrada de Choja

Tarapacá

-21.085278°

-68.867222°

3400

15

JG 459

El Colorado, Farellones

Metropolitana

-33.343293°

-70.294183°

2780

15

JG 465

El Colorado, Farellones

Metropolitana

-33.343293°

-70.294183°

2780

15

JG 466

El Colorado, Farellones

Metropolitana

-33.343293°

-70.294183°

2780

15

JG 467

El Colorado, Farellones

Metropolitana

-33.343293°

-70.294183°

2780

15

JG 468

El Colorado, Farellones

Metropolitana

-33.343293°

-70.294183°

2780

15

JG 471

El Colorado, Farellones

Metropolitana

-33.343293°

-70.294183°

2780

16

JG 473

Lomas del Viento, Farellones

Metropolitana

-33.358908°

-70.326116°

2436

16

JG 474

Lomas del Viento, Farellones

Metropolitana

-33.358908°

-70.326116°

2436

16

JG 475

Lomas del Viento, Farellones

Metropolitana

-33.358908°

-70.326116°

2436

16

JG 476

Lomas del Viento, Farellones

Metropolitana

-33.358908°

-70.326116°

2436

18

JG 479

2 km E El Volcán, Cajón del Maipo

Metropolitana

-33.828802°

-70.046349°

1850

Figure 1. Map of the central Andes depicting type localities of the nominal forms (purple squares) traditionally associated to Abrothrix andina and the localities represented by sequences in the phylogenetic analyses (yellow squares). From north to south, type localities are: Salinas, Peru (polius); San Pedro de Atacama, Chile (dolichonyx); Campo Laguna, Argentina (jucundus); Leoncitos, Chile (cinnamomea); Puente del Inca, Argentina (gossei); and the Andes near Santiago, Chile (andinus). Localities represented by sequences are: (1) Arequipa; (2) Putre; (3) PN Sajama; (4) Quebrada de Choja; (5) Laguna de Vilama; (6) Abra de Zenta; (7) Abra Colorada; (8) Laguna Verde; (9) Nevado del Chañi; (10) Volcán Tuzgle; (11) Lagunas de Huaca Huasi; (12) Cerro Mercedario; (13) Uspallata; (14) Cristo Redentor; (15) El Colorado; (16) Lomas del Viento; (17) Valle Nevado; (18) Cajón del Maipo; and (19) Lo Valdés.

Figure 2. Sampled localities of typical Abrothrix andina and external appearance of selected specimens. (A) Landscape view of Farellones, Chile; (B) Lo Valdés, Chile; (C–F) topotype of A. andina (JG 479), photographed fresh-dead: (C) dorsal view, (D) lateral view, (E) ventral view, and (F) detail of tail and hind foot. Photographs by Jonathan A. Guzmán Sandoval.

Figure 3. Phylogenetic reconstruction derived from new and available cyt b sequences of Abrothrix, represented by the final Bayesian 50% majority-rule consensus tree.

Figure 4. Heatmap showing percent sequence divergence at the cyt b locus between clades of Abrothrix identified in the phylogenetic analysis, generated using the pheatmap R package.

Figure 5. External appearance of two Abrothrix from high Andean ranges. (A) individual attributed to A. andina photographed in wild at Embalse del Yeso, 50 km southeast of Santiago de Chile. (B) individual of A. gossei photographed in wild at Refugio Andino Cerro Mercedario, San Juan, Argentina. Photographs by T. Aronson and M. Tammone.